Analysis

Note

For up-to-date examples, please see van-richard/amberassist

• 1. Pairwise RMSD
• 2. Antechamber
• 3. Export Dry Trajectory (no water)
• 4. PCA with CPPTRAJ
• 5. parmchk2.sh
• 6. parmed
• 7. Principal Component Analysis
• 8. Plot PMF with PyMBAR
• 9. RDF
• 10. Root Mean Square Deviation (RMSD)
• 11. Root Mean Square Fluctuation (RMSF)
• 12. tleap