simulations# maybe someday… but not today. Theory / Methods Overview Molecular Descriptors Properties of Interest Other Methods Literature Binding Affinity Simulating Binding Affinity Classical Molecular Dynamics Potential Energy Force Fields FE Alchem Alchemical Free Energy Free Energy Estimators QM/MM Simulations Overview Bonded Interactions Nonbonded Interactions Electrostatic Embedding Short-Range Compile Notes Tutorial Analysis